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Liver tumour immune microenvironment subtypes and neutrophil heterogeneity

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机构: [1]Translational Cancer Research Center, Peking University First Hospital, Beijing, China [2]BIOPIC, Beijing Advanced Innovation Center for Genomics, School of Life Sciences, Peking University,Beijing, China [3]Beijing Key Surgical Basic Research Laboratory of Liver Cirrhosis and Liver Cancer, Department of Hepatobiliary Surgery, Peking University People’s Hospital, Beijing, China [4]International Cancer Institute, Peking University Health Science Center, Beijing, China [5]Changping Laboratory, Beijing, China [6]Yunnan Baiyao Group, Kunming, China
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The heterogeneity of the tumour immune microenvironment (TIME), organized by various immune and stromal cells, is a major contributing factor of tumour metastasis, relapse and drug resistance1-3, but how different TIME subtypes are connected to the clinical relevance in liver cancer remains unclear. Here we performed single-cell RNA-sequencing (scRNA-seq) analysis of 189 samples collected from 124 patients and 8 mice with liver cancer. With more than 1 million cells analysed, we stratified patients into five TIME subtypes, including immune activation, immune suppression mediated by myeloid or stromal cells, immune exclusion and immune residence phenotypes. Different TIME subtypes were spatially organized and associated with chemokine networks and genomic features. Notably, tumour-associated neutrophil (TAN) populations enriched in the myeloid-cell-enriched subtype were associated with an unfavourable prognosis. Through in vitro induction of TANs and ex vivo analyses of patient TANs, we showed that CCL4+ TANs can recruit macrophages and that PD-L1+ TANs can suppress T cell cytotoxicity. Furthermore, scRNA-seq analysis of mouse neutrophil subsets revealed that they are largely conserved with those of humans. In vivo neutrophil depletion in mouse models attenuated tumour progression, confirming the pro-tumour phenotypes of TANs. With this detailed cellular heterogeneity landscape of liver cancer, our study illustrates diverse TIME subtypes, highlights immunosuppressive functions of TANs and sheds light on potential immunotherapies targeting TANs.© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

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大类 | 1 区 综合性期刊
小类 | 1 区 综合性期刊
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大类 | 1 区 综合性期刊
小类 | 1 区 综合性期刊
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第一作者机构: [1]Translational Cancer Research Center, Peking University First Hospital, Beijing, China
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通讯机构: [1]Translational Cancer Research Center, Peking University First Hospital, Beijing, China [2]BIOPIC, Beijing Advanced Innovation Center for Genomics, School of Life Sciences, Peking University,Beijing, China [4]International Cancer Institute, Peking University Health Science Center, Beijing, China [5]Changping Laboratory, Beijing, China [6]Yunnan Baiyao Group, Kunming, China
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