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GoFCards: an integrated database and analytic platform for gain of function variants in humans

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机构: [1]Cent South Univ, Xiangya Hosp, Natl Clin Res Ctr Geriatr Disorders, Dept Geriatr, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [2]Cent South Univ, Ctr Med Genet, Sch Life Sci, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [3]First Peoples Hosp Yunnan Prov, Dept Med Genet, NHC Key Lab Hlth Birth & Birth Defect Prevent West, 157Jinbi Rd, Kunming 650000, Yunnan, Peoples R China [4]Kunming Univ Sci & Technol, Sch Med, 727Jingming South Rd, Kunming 650000, Yunnan, Peoples R China [5]Cent South Univ, Xiangya Sch Med, 172 Tongzipo Rd, Changsha 410008, Hunan, Peoples R China [6]Cent South Univ, Sch Life Sci, 172 Tongzipo Rd, Changsha 410008, Hunan, Peoples R China [7]Cent South Univ, MOE Key Lab Pediat Rare Dis, 110 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [8]Cent South Univ, Hunan Key Lab Med Genet, 110 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [9]Univ South China, Affiliated Hosp 1, Dept Neurol, 69 Chuan Shan Rd, Hengyang 421000, Hunan, Peoples R China [10]Univ South China, Affiliated Hosp 1, Multi Res Ctr Brain Disorders, 69 Chuan Shan Rd, Hengyang 421000, Hunan, Peoples R China [11]Cent South Univ, Xiangya Hosp, Dept Neurol, Key Lab Hunan Prov Neurodegenerat Disorders, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [12]Cent South Univ, Furong Lab, Bioinformat Ctr, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [13]Cent South Univ, Xiangya Hosp, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China
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Gain-of-function (GOF) variants, which introduce new or amplify protein functions, are essential for understanding disease mechanisms. Despite advances in genomics and functional research, identifying and analyzing pathogenic GOF variants remains challenging owing to fragmented data and database limitations, underscoring the difficulty in accessing critical genetic information. To address this challenge, we manually reviewed the literature, pinpointing 3089 single-nucleotide variants and 72 insertions and deletions in 579 genes associated with 1299 diseases from 2069 studies, and integrated these with the 3.5 million predicted GOF variants. Our approach is complemented by a proprietary scoring system that prioritizes GOF variants on the basis of the evidence supporting their GOF effects and provides predictive scores for variants that lack existing documentation. We then developed a database named GoFCards for general geneticists and clinicians to easily obtain GOF variants in humans (http://www.genemed.tech/gofcards). This database also contains data from >150 sources and offers comprehensive variant-level and gene-level annotations, with the aim of providing users with convenient access to detailed and relevant genetic information. Furthermore, GoFCards empowers users with limited bioinformatic skills to analyze and annotate genetic data, and prioritize GOF variants. GoFCards offers an efficient platform for interpreting GOF variants and thereby advancing genetic research.<br /> [GRAPHICS] .

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大类 | 2 区 生物学
小类 | 2 区 生化与分子生物学
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出版当年[2023]版:
Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
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Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2023版] 出版当年五年平均 出版前一年[2022版]

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第一作者机构: [1]Cent South Univ, Xiangya Hosp, Natl Clin Res Ctr Geriatr Disorders, Dept Geriatr, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [2]Cent South Univ, Ctr Med Genet, Sch Life Sci, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [3]First Peoples Hosp Yunnan Prov, Dept Med Genet, NHC Key Lab Hlth Birth & Birth Defect Prevent West, 157Jinbi Rd, Kunming 650000, Yunnan, Peoples R China [4]Kunming Univ Sci & Technol, Sch Med, 727Jingming South Rd, Kunming 650000, Yunnan, Peoples R China
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通讯机构: [1]Cent South Univ, Xiangya Hosp, Natl Clin Res Ctr Geriatr Disorders, Dept Geriatr, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [2]Cent South Univ, Ctr Med Genet, Sch Life Sci, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [11]Cent South Univ, Xiangya Hosp, Dept Neurol, Key Lab Hunan Prov Neurodegenerat Disorders, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [12]Cent South Univ, Furong Lab, Bioinformat Ctr, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China [13]Cent South Univ, Xiangya Hosp, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China
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