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Alteration of tumor-associated macrophage subtypes mediated by KRT6A in pancreatic ductal adenocarcinoma

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机构: [1]Univ Chinese Acad Sci, Chongqing Gen Hosp, Inst Hepatopancreatobiliary Surg, Chongqing 401120, Peoples R China [2]Third Mil Med Univ, Affiliated Hosp 1, Dept Rheumatol, Chongqing 400038, Peoples R China [3]Third Mil Med Univ, Army Med Univ, Southwest Hosp, Inst Hepatopancreatobiliary Surg, Chongqing 400038, Peoples R China [4]Southern Med Univ, Zhujiang Hosp, Dept Hepatobiliary Surg, Guangzhou 510280, Guangdong, Peoples R China [5]Third Mil Med Univ, Army Med Univ, Xinqiao Hosp, Dept Orthoped, Chongqing 400038, Peoples R China [6]Kunming Med Univ, Affiliated Hosp 2, Hepatopancreatobiliary Surg Dept, Kunming 650101, Yunnan, Peoples R China [7]Third Mil Med Univ, Dept Pathophysiol, Coll High Altitude Mil Med, Chongqing 400038, Peoples R China [8]Minist Educ China, Key Lab Extreme Environm Med, Chongqing 400038, Peoples R China [9]PLA, Key Lab High Altitude Med, Chongqing 400038, Peoples R China
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关键词: pancreatic ductal adenocarcinoma tumor-associated macrophages KRT6A tumor immune microenvironment

摘要:
Pancreatic ductal adenocarcinoma (PDAC) is severely affecting the health and lives of patients. Clarifying the composition and regulatory factors of tumor immune microenvironment (TIME) is helpful for the treatment of PDAC. We analyzed the unique TIMEs and gene expression patterns between PDAC and adjacent normal tissue (ANT) using Gene Expression Omnibus (GEO) to find new immunotherapy targets. The Cancer Genome Atlas (TCGA) datasets were used to elucidate the possible mechanism of which tumor-associated macrophages (TAMs) changed in PDAC. We found that the composition of TAMs subtypes, including M0, M1, and M2, was different between PDAC and ANT, which was validated in recently published single-cell RNA-seq data. Many immune cells interacted with each other to affect the TIME. There were many DEGs enriched in some pathways that could potentially change the immune cell composition. KRT6A was found to be a DEG between PDAC and ANT that overlapped with DEGs between the M0-high group and the M0-low group in TCGA datasets, and it might alter and regulate TAMs via a collection of genes including COL5A2, COL1A2, MIR3606, SPARC, and COL6A3. TAMs, which could be a target of immunotherapy, might be influenced by genes through KRT6A and indicate an undesirable prognosis in PDAC.

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出版当年[2020]版:
大类 | 2 区 医学
小类 | 1 区 老年医学 3 区 细胞生物学
最新[2023]版:
大类 | 3 区 医学
小类 | 3 区 细胞生物学 3 区 老年医学
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出版当年[2019]版:
Q1 GERIATRICS & GERONTOLOGY Q2 CELL BIOLOGY
最新[2023]版:
Q2 CELL BIOLOGY Q2 GERIATRICS & GERONTOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2019版] 出版当年五年平均 出版前一年[2018版] 出版后一年[2020版]

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第一作者机构: [1]Univ Chinese Acad Sci, Chongqing Gen Hosp, Inst Hepatopancreatobiliary Surg, Chongqing 401120, Peoples R China
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通讯机构: [7]Third Mil Med Univ, Dept Pathophysiol, Coll High Altitude Mil Med, Chongqing 400038, Peoples R China [8]Minist Educ China, Key Lab Extreme Environm Med, Chongqing 400038, Peoples R China [9]PLA, Key Lab High Altitude Med, Chongqing 400038, Peoples R China
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