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Construction and validation of a novel coagulation-related 7-gene prognostic signature for gastric cancer

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机构: [1]Second Clinical Medical College, Lanzhou University, Lanzhou, China. [2]Chengdu Seventh People's Hospital, Chengdu, China. [3]State Key Laboratory of Genetic Resources and Evolution/Key Laboratory of Healthy Aging Research of Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. [4]Department of oncology, First Hospital of Lanzhou University, Lanzhou, China. [5]Key Laboratory of the Digestive System Tumors of Gansu Province, Lanzhou, China. [6]Department of Cancer Center, Lanzhou University Second Hospital, Lanzhou, China.
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关键词: gastric cancer coagulation-related genes prognostic signature weighted gene coexpression network analysis (WGCNA) bioinformatics

摘要:
Background: Gastric cancer (GC) is the most common malignant tumor. Due to the lack of practical molecular markers, the prognosis of patients with advanced gastric cancer is still poor. A number of studies have confirmed that the coagulation system is closely related to tumor progression. Therefore, the purpose of this study was to construct a coagulation-related gene signature and prognostic model for GC by bioinformatics methods. Methods: We downloaded the gene expression and clinical data of GC patients from the TCGA and GEO databases. In total, 216 coagulation-related genes (CRGs) were obtained from AmiGO 2. Weighted gene co-expression network analysis (WGCNA) was used to identify coagulation-related genes associated with the clinical features of GC. Last absolute shrinkage and selection operator (LASSO) Cox regression was utilized to shrink the relevant predictors of the coagulation system, and a Coag-Score prognostic model was constructed based on the coefficients. According to this risk model, GC patients were divided into high-risk and low-risk groups, and overall survival (OS) curves and receiver operating characteristic (ROC) curves were drawn in the training and validation sets, respectively. We also constructed nomograms for predicting 1-, 2-, and 3-year survival in GC patients. Single-sample gene set enrichment analysis (ssGSEA) was exploited to explore immune cells' underlying mechanisms and correlations. The expression levels of coagulation-related genes were verified by real-time quantitative polymerase chain reaction (qRT-PCR) and immunohistochemistry (IHC). Results: We identified seven CRGs employed to construct a Coag-Score risk model using WGCNA combined with LASSO regression. In both training and validation sets, GC patients in the high-risk group had worse OS than those in the low-risk group, and Coag-Score was identified as an independent predictor of OS, and the nomogram provided a quantitative method to predict the 1-, 2-, and 3-year survival rates of GC patients. Functional analysis showed that Coag-Score was mainly related to the MAPK signaling pathway, complement and coagulation cascades, angiogenesis, epithelial-mesenchymal transition (EMT), and KRAS signaling pathway. In addition, the high-risk group had a significantly higher infiltration enrichment score and was positively associated with immune checkpoint gene expression. Conclusion: Coagulation-related gene models provide new insights and targets for the diagnosis, prognosis prediction, and treatment management of GC patients.Copyright © 2022 Wang, Zou, Wang, Wang, Zhang, Gao, Ma, Zheng, Gu, Li, Wang, He, Ma, Wang and Chen.

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出版当年[2022]版:
大类 | 3 区 生物学
小类 | 3 区 遗传学
最新[2023]版:
大类 | 3 区 生物学
小类 | 3 区 遗传学
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第一作者机构: [1]Second Clinical Medical College, Lanzhou University, Lanzhou, China.
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通讯机构: [1]Second Clinical Medical College, Lanzhou University, Lanzhou, China. [5]Key Laboratory of the Digestive System Tumors of Gansu Province, Lanzhou, China. [6]Department of Cancer Center, Lanzhou University Second Hospital, Lanzhou, China.
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