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Molecular characterization of the viral structural gene of the first dengue virus type 1 outbreak in Xishuangbanna: A border area of China, Burma and Laos

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机构: [1]Institute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, PR China [2]Yunnan Key Laboratory of Vaccine Research & Development on Severe Infectious Diseases, Kunming, PR China [3]Xishuangbanna Dai Autonomous Prefecture People’s Hospital, Xishuangbanna, PR China [4]Yunnan Key Laboratory of Vector-borne Infectious Disease, Kunming, PR China [5]Kunming Medical University, Kunming, PR China [6]The Affiliated Children’s Hospital of Kunming Medical University, Institute of Pediatric Disease Research, Kunming, PR China
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关键词: Dengue virus type 1 Xishuangbanna Molecular characterization Structural gene

摘要:
Xishuangbanna, a border area of China, Burma and Laos, had its first major DENV-1 outbreak in 2017. This study aims to explore the genetic characterization, potential source and evolution of the viruses in outbreak.The structural protein C/prM/E genes of viruses isolated from local residents or Burmese travelers were sequenced followed by mutation, phylogenetic, homologous recombination, molecular clock and demographic reconstruction analysis.Phylogenetic analysis revealed that all of the strains were classified as three cluster of DENV-1. Cluster 1, 2 and 3 were most similar to China Guangzhou 2011, China Hubei 2014 and Laos 2008 strain, respectively. Among 236 base mutations, 31 caused nonsynonymous mutations when compared with the DENV-1SS. No homologous recombination signal was discovered. The structural protein of these strains had similar three-dimensional structure. Only site 434 showed differences among five predicted protein binding sites. Molecular clock phylogenetic and demographic reconstruction analysis showed that DENV-1 became highly diversified in 1972 followed by a slightly decreased period until 2017.Dengue isolated strains show diversification between Burma and China. Amino acid substitution (I440T) may lead to weakened virulence of the epidemic strains. DENV-1 became highly diversified in 1972 followed by a slightly decreased period.Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

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出版当年[2019]版:
大类 | 3 区 医学
小类 | 3 区 传染病学
最新[2023]版:
大类 | 2 区 医学
小类 | 2 区 传染病学
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第一作者机构: [1]Institute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, PR China [2]Yunnan Key Laboratory of Vaccine Research & Development on Severe Infectious Diseases, Kunming, PR China [4]Yunnan Key Laboratory of Vector-borne Infectious Disease, Kunming, PR China
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通讯机构: [1]Institute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, PR China [2]Yunnan Key Laboratory of Vaccine Research & Development on Severe Infectious Diseases, Kunming, PR China [4]Yunnan Key Laboratory of Vector-borne Infectious Disease, Kunming, PR China [*1]Institute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, PR China.
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