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A 17-gene expression-based prognostic signature associated with the prognosis of patients with breast cancer A STROBE-compliant study

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机构: [1]Department of Breast Surgery, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, People’s Republic of China [2]Yangtze University,Jingzhou Central Hospital, Galactophore Department, The Second Clinical Medical College, Jingzhou, People’s Republic of China [3]School of Life Sciences, YunnanUniversity, Kunming 650091, People’s Republic of China.
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关键词: breast cancer least absolute shrinkage and selection operator prognosis significance prognostic signature

摘要:
Identification of reliable predictive biomarkers for patients with breast cancer (BC). Univariate Cox proportional hazards regression model was conducted to identify genes correlated with the overall survival (OS) of patients in the TCGA-BRCA cohort. Functional enrichment analysis was conducted to investigate the biological meaning of these survival related genes. Then, patients in TCGA-BCRA were randomly divided into training set and test. Least absolute shrinkage and selection operator (LASSO) penalized Cox regression model was performed and the risk score of BC patients in this model was used to build a prognostic signature. The prognostic performance of the signature was evaluated in the training set, test set, and an independent validation set GSE7390. 2519 genes were demonstrated to be significantly associated with the OS of BC patients. Functional annotation of the 2519 genes suggested that these genes were associated with immune response and protein synthesis related gene ontology terms and pathways. 17 genes were identified in the LASSO Cox regression model and used to construct a 17-gene signature. Patients in the 17-gene signature low risk group have better OS and event-free survival compared with those in the 17-gene signature high risk group in the TCGA-BRCA cohort. The prognostic role of the 17-gene signature has been confirmed in the validation cohort. Multivariable Cox proportional hazards regression model suggested the 17-gene signature was an independent prognostic factor in BC. The 17-gene signature we developed could successfully classify patients into high-and low-risk groups, indicating that it might serve as candidate biomarker in BC.

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出版当年[2020]版:
大类 | 4 区 医学
小类 | 4 区 医学:内科
最新[2023]版:
大类 | 4 区 医学
小类 | 4 区 医学:内科
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出版当年[2019]版:
Q3 MEDICINE, GENERAL & INTERNAL
最新[2023]版:
Q2 MEDICINE, GENERAL & INTERNAL

影响因子: 最新[2023版] 最新五年平均 出版当年[2019版] 出版当年五年平均 出版前一年[2018版] 出版后一年[2020版]

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第一作者机构: [1]Department of Breast Surgery, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, People’s Republic of China [*1]No. 295 Xichang Road, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, 650032, People’s Republic of China
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通讯机构: [1]Department of Breast Surgery, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, People’s Republic of China [3]School of Life Sciences, YunnanUniversity, Kunming 650091, People’s Republic of China. [*1]No. 295 Xichang Road, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, 650032, People’s Republic of China [*2]No. 2 Cuihubei Road, KunMing, School of Life Sciences, Yunnan University, Kunming 650091, People’s Republic of China
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