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Genome-wide identification, domain architectures and phylogenetic analysis provide new insights into the early evolution of shikimate pathway in prokaryotes

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资源类型：
Pubmed体系：
作者：
Zhi, X.-Y[a,b,*1] * ; Yao, J.-C[a] * ; Li, H.-W[a,c] ; Huang, Y[b] ; Li, W.-J[a,d,*1] ;
机构： [a]Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and the Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, PR China [b]State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China [c]The First Hospital of Qujing City, Qujing Affiliated Hospital of Kunming Medical College, Qujing 655000, PR China [d]Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Science, ür}umqi 830011, PR China
出处：
DOI： 10.1016/j.ympev.2014.02.015
ISSN：

关键词： Shikimate pathway Pathway evolution Domain architectures Phylogenetic analysis Horizontal gene transfer

摘要：
Despite intense scrutiny from researchers in the fields of biochemistry and metabolism, our understanding of the evolutionary history of the key anabolic shikimate pathway remains limited. To shed light on the early evolutionary events leading to the assembly of the pathway, we investigated the distributions, domain architectures and phylogenies of component enzymes using a bioinformatic procedure based on Hidden Markov Model profiles. The aro genes for the canonical shikimate pathway had most wider distribution in prokaryotes; and the variant pathway coordinated by 2-amino-3,7-dideoxy-D- threo-hept-6-ulosonic acid (ADH) synthase and type II 3-dehydroquinate (DHQ) synthase could be identified in most of archaeal species. In addition, the ancient bidirectional horizontal gene transfer events had happened between two prokaryotic domains: Bacteria and Archaea. Besides 3-deoxy-D- arabino-heptulosonate 7-phosphate (DAHP) synthase, the phylogenetically distinct subfamilies of 5-enolpyruvylshikimate 3-phosphate (EPSP) synthase and chorismate synthase had ever emerged in the evolutionary history of shikimate pathway. These findings provide new insight into the early evolution of the shikimate pathway and advance our understanding of the evolution of metabolic pathways. © 2014 Elsevier Inc.

基金：
National Basic Research Program of China (No. 2010CB833801), National Natural Science Foundation of China (No. 31100008), the opening project of State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences (No. SKLMR-20110602), and Yunnan University (No. 2011YB01).
语种：
外文
PubmedID：
中科院(CAS)分区：
出版当年[2014]版：
大类 | 2 区 生物
小类 | 3 区 生化与分子生物学 3 区 进化生物学 3 区 遗传学
最新[2023]版：
大类 | 1 区 生物学
小类 | 1 区 生化与分子生物学 1 区 遗传学 2 区 进化生物学
第一作者：
第一作者机构： [a]Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and the Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, PR China [b]State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China [*1]Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and the Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, PR China.
共同第一作者：
通讯作者：
通讯机构： [a]Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and the Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, PR China [b]State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China [d]Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Science, ür}umqi 830011, PR China [*1]Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and the Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, PR China.
推荐引用方式(GB/T 7714)：
Zhi X.-Y,Yao J.-C,Li H.-W,et al.Genome-wide identification, domain architectures and phylogenetic analysis provide new insights into the early evolution of shikimate pathway in prokaryotes[J].Molecular phylogenetics and evolution.2014,75:154-64.doi:10.1016/j.ympev.2014.02.015.
APA：
Zhi, X.-Y,Yao, J.-C,Li, H.-W,Huang, Y&Li, W.-J.(2014).Genome-wide identification, domain architectures and phylogenetic analysis provide new insights into the early evolution of shikimate pathway in prokaryotes.Molecular phylogenetics and evolution,75,
MLA：
Zhi, X.-Y,et al."Genome-wide identification, domain architectures and phylogenetic analysis provide new insights into the early evolution of shikimate pathway in prokaryotes".Molecular phylogenetics and evolution 75.(2014):154-64

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