Background: Escherichia coli is the most common pathogenic bacteria that frequently causes life-threatening opportunistic human infections, diarrhea, and septicemia in immunocompromised hosts. Methods: This study aimed to establish a loop-mediated isothermal amplification (LAMP) method for the rapid and sensitive detection of a hypothetical protein from an E. coli-specific gene (GenBank ID: 13702648). The gene was obtained through local and online BLAST, and specific primers were designed for this gene. Reaction conditions were optimized at 65 degrees C for 30 minutes and 80 degrees C for 2 minutes, whereas the reaction system contained 5.2 mM Mg2+, 8 U of Bst 2.0 DNA polymerase, 1.4 mM deoxyribonucleotide, and 0.2 and 1.6 mu M of the outer and inner primers, respectively. The LAMP method was evaluated using 240 strains of E. coli and 150 strains of non-E. coli. Results: Positive reactions were observed on all 240 strains of E. coli while all non-E. coli strains were negative. Plasmids with the specific gene and mice blood with E. coli were used for sensitivity analysis. The detection limit of LAMP was 10(0) bacterium/reaction. Conclusions: Results showed that the LAMP targeted to the hypothetical protein (GenBank ID: 13702648) is a fast, specific, sensitive, inexpensive, and suitable method for the detection of E. coli.
基金:
Yunnan Science and Technology Commission [2015BC001, 2015DH010]
第一作者机构:[1]Kunming Univ Sci & Technol, Fac Life Sci & Technol, Kunming 650500, Yunnan, Peoples R China[2]Mol Med Ctr Yunnan Prov, Kunming, Yunnan, Peoples R China
推荐引用方式(GB/T 7714):
Li Chao,Shi Yao-Qiang,Yang Guang-Ying,et al.Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Hypothetical Protein Gene in Escherichia Coli Clinical Isolates[J].CLINICAL LABORATORY.2019,65(4):499-506.doi:10.7754/Clin.Lab.2018.180826.
APA:
Li, Chao,Shi, Yao-Qiang,Yang, Guang-Ying,Xia, Xue-Shan,Mao, Xiao-Qin...&Song, Yu-Zhu.(2019).Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Hypothetical Protein Gene in Escherichia Coli Clinical Isolates.CLINICAL LABORATORY,65,(4)
MLA:
Li, Chao,et al."Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Hypothetical Protein Gene in Escherichia Coli Clinical Isolates".CLINICAL LABORATORY 65..4(2019):499-506